PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG035310.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 678aa    MW: 73138.4 Da    PI: 5.1676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG035310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06413434426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +lC+f++  G C+ G+ CkF+H+
  TRIDC3BG035310.1 413 KLCHFYMH-GKCQQGNACKFSHD 434
                       79**8888.*************7 PP
2zf-CCCH18.14.9e-06440462225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k ++C +far G C  Gd C++ H
  TRIDC3BG035310.1 440 KSKPCTHFAR-GSCLKGDDCPYDH 462
                       6789******.************* PP
3zf-CCCH222.9e-07468489526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f ++G C +Gd+CkF+H+
  TRIDC3BG035310.1 468 PCHNFVENGMCFRGDKCKFSHV 489
                       7********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MEDSLVPPVP PAPTTLFLTR RRSHLDSASY RTLSRLFSHC LHHRPSQLAA PAPLEVEPAA  60
ANPICDESPQ GCSVPPGRGK DLGEEETAVR TSVIENPSPA AVDAATGNPI ADPAVAPQRY  120
MENQVAGVQR VEGVTDMVVG GNVCRETVAF VEELGAEDVL RSMKDCLEGE VDELAEPDVV  180
VVNDDEHLLL DTMMTNFSGL IADASGGTTS MLNYGVSGGE PHNDGNIAEG VKELGAGTEE  240
DRPVGGLDQH SVDGGVVEEG EIEGDMQALD VDESDDSELE DADDEELEED FTNRVLGENE  300
SSGQDIPCLN LLSTPKTKGT SDLVLNKEGY IKDDALKHVT RAQAVSYDEI VEWNETPLPD  360
AEAPKLGKRK RHLTEERKAK KTKNKRVKRA QQRIADGVKR LKLAPVIKPK PVKLCHFYMH  420
GKCQQGNACK FSHDTTPLTK SKPCTHFARG SCLKGDDCPY DHELSKYPCH NFVENGMCFR  480
GDKCKFSHVV PTADGPSKPD AKKSDASLVS EKPGREQTSS QKASTVHDGE RVTSAPTKHY  540
SILKNLAGIS VNALKASTST PKGVQFRPSS KDRSNSSMLH QDALTIEKHM YTNGSKHQNF  600
GGPQAEEGDK NVSPNKQRSA PLLDEKNSSK EASSHPSSDP KGTSLPTGST TVLGSLSTQH  660
EVSEASRILQ EFLFGAGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.13e-07C3H family protein