PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028340.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 439aa MW: 47163.9 Da PI: 8.2194

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028340.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	1.9e-11	24	49	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ TRIDC3BG028340.5 24 DQADCIYYLRTGACGFGDRCRYNHPR 49 6789********************96 PP
2	zf-CCCH	39.8	7.4e-13	74	98	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3BG028340.5 74 QPVCEYYMKTGTCKFGSNCKYHHPK 98 789********************96 PP
3	zf-CCCH	40	6.6e-13	118	143	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3BG028340.5 118 GEKECSYYMKTGQCKFGSTCKFHHPE 143 7899********************96 PP
4	zf-CCCH	38.6	1.9e-12	271	297	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3BG028340.5 271 PGQPECQYYMRTGDCKFGATCKYHHPR 297 5789*********************96 PP
5	zf-CCCH	34.1	4.5e-11	320	343	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3BG028340.5 320 QPCSYYAQNGYCRYGVACKYDHPM 343 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MWRMGLAGDG GGEGDGARLP ERPDQADCIY YLRTGACGFG DRCRYNHPRD RGGTEFGGGA 60 KNAVALDYPE RLGQPVCEYY MKTGTCKFGS NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK 120 ECSYYMKTGQ CKFGSTCKFH HPEFGGIPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP 180 VVPGSYMPGS YTPMMLSSGM IPLQGWSPYP ASVNPVASGG AQQTVQAGPM YGIGHHGSSS 240 TIAYGGPYMP YSSSTIQSSN NQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS 300 SPKSNYMFSP FCLPLRPGAQ PCSYYAQNGY CRYGVACKYD HPMGTLGYSS SPFPLSDVPI 360 APYPLGFSIA TLAPSSSSQD LRPEYISAKD PSVNQVGSPV AASEPSGSIL PKGVFPPDTV 420 MRAQANTTTG GSSSPGGGR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MWRMGLAGDG GGEGDGARLP ERPDQADCIY YLRTGACGFG DRCRYNHPRD RGGTEFGGGA  60
KNAVALDYPE RLGQPVCEYY MKTGTCKFGS NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK  120
ECSYYMKTGQ CKFGSTCKFH HPEFGGIPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP  180
VVPGSYMPGS YTPMMLSSGM IPLQGWSPYP ASVNPVASGG AQQTVQAGPM YGIGHHGSSS  240
TIAYGGPYMP YSSSTIQSSN NQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS  300
SPKSNYMFSP FCLPLRPGAQ PCSYYAQNGY CRYGVACKYD HPMGTLGYSS SPFPLSDVPI  360
APYPLGFSIA TLAPSSSSQD LRPEYISAKD PSVNQVGSPV AASEPSGSIL PKGVFPPDTV  420
MRAQANTTTG GSSSPGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-121	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028340.5