PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG028340.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 49924.8 Da PI: 7.5969 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 55 | 80 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ TRIDC3BG028340.4 55 DQADCIYYLRTGACGFGDRCRYNHPR 80 6789********************96 PP | |||||||
2 | zf-CCCH | 39.7 | 8e-13 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3BG028340.4 105 QPVCEYYMKTGTCKFGSNCKYHHPK 129 789********************96 PP | |||||||
3 | zf-CCCH | 39.9 | 7.2e-13 | 149 | 174 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3BG028340.4 149 GEKECSYYMKTGQCKFGSTCKFHHPE 174 7899********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3BG028340.4 302 PGQPECQYYMRTGDCKFGATCKYHHPR 328 5789*********************96 PP | |||||||
5 | zf-CCCH | 34 | 4.9e-11 | 351 | 374 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3BG028340.4 351 QPCSYYAQNGYCRYGVACKYDHPM 374 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence |
MEPHPAAAAG GGGGEGEAGR GADPDTGLEG SMWRMGLAGD GGGEGDGARL PERPDQADCI 60 YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVALDYP ERLGQPVCEY YMKTGTCKFG 120 SNCKYHHPKQ DGSVQPVMLN SNGFPLRPGE KECSYYMKTG QCKFGSTCKF HHPEFGGIPV 180 TPGIYPPLQS STVPSPHPYA PLTNWQMGRP PVVPGSYMPG SYTPMMLSSG MIPLQGWSPY 240 PASVNPVASG GAQQTVQAGP MYGIGHHGSS STIAYGGPYM PYSSSTIQSS NNQQEHGFPE 300 RPGQPECQYY MRTGDCKFGA TCKYHHPRDW SSPKSNYMFS PFCLPLRPGA QPCSYYAQNG 360 YCRYGVACKY DHPMGTLGYS SSPFPLSDVP IAPYPLGFSI ATLAPSSSSQ DLRPEYISAK 420 DPSVNQVGSP VAASEPSGSI LPKGVFPPDT VMRAQANTTT GGSSSPGGGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-125 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG028340.4 |