PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028340.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 335aa MW: 36188.8 Da PI: 8.6508

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028340.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.3	5.3e-13	14	38	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3BG028340.2 14 QPVCEYYMKTGTCKFGSNCKYHHPK 38 789********************96 PP
2	zf-CCCH	40.4	4.7e-13	58	83	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3BG028340.2 58 GEKECSYYMKTGQCKFGSTCKFHHPE 83 7899********************96 PP
3	zf-CCCH	39	1.3e-12	211	237	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3BG028340.2 211 PGQPECQYYMRTGDCKFGATCKYHHPR 237 5789*********************96 PP
4	zf-CCCH	34.6	3.2e-11	260	283	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3BG028340.2 260 QPCSYYAQNGYCRYGVACKYDHPM 283 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
KNAVALDYPE RLGQPVCEYY MKTGTCKFGS NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK 60 ECSYYMKTGQ CKFGSTCKFH HPEFGGIPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP 120 VVPGSYMPGS YTPMMLSSGM IPLQGWSPYP ASVNPVASGG AQQTVQAGPM YGIGHHGSSS 180 TIAYGGPYMP YSSSTIQSSN NQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS 240 SPKSNYMFSP FCLPLRPGAQ PCSYYAQNGY CRYGVACKYD HPMAKDPSVN QVGSPVAASE 300 PSGSILPKGV FPPDTVMRAQ ANTTTGGSSS PGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	3e-95	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028340.2