PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG028340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 416aa MW: 44796.3 Da PI: 8.3136 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.7e-11 | 2 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C +GdrC+++H++ TRIDC3BG028340.1 2 QADCIYYLRTGACGFGDRCRYNHPR 26 579********************96 PP | |||||||
2 | zf-CCCH | 39.9 | 6.9e-13 | 51 | 75 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3BG028340.1 51 QPVCEYYMKTGTCKFGSNCKYHHPK 75 789********************96 PP | |||||||
3 | zf-CCCH | 40.1 | 6.2e-13 | 95 | 120 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3BG028340.1 95 GEKECSYYMKTGQCKFGSTCKFHHPE 120 7899********************96 PP | |||||||
4 | zf-CCCH | 38.6 | 1.7e-12 | 248 | 274 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3BG028340.1 248 PGQPECQYYMRTGDCKFGATCKYHHPR 274 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.2 | 4.3e-11 | 297 | 320 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3BG028340.1 297 QPCSYYAQNGYCRYGVACKYDHPM 320 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence |
DQADCIYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNA VALDYPERLG QPVCEYYMKT 60 GTCKFGSNCK YHHPKQDGSV QPVMLNSNGF PLRPGEKECS YYMKTGQCKF GSTCKFHHPE 120 FGGIPVTPGI YPPLQSSTVP SPHPYAPLTN WQMGRPPVVP GSYMPGSYTP MMLSSGMIPL 180 QGWSPYPASV NPVASGGAQQ TVQAGPMYGI GHHGSSSTIA YGGPYMPYSS STIQSSNNQQ 240 EHGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDWSSPK SNYMFSPFCL PLRPGAQPCS 300 YYAQNGYCRY GVACKYDHPM GTLGYSSSPF PLSDVPIAPY PLGFSIATLA PSSSSQDLRP 360 EYISAKDPSV NQVGSPVAAS EPSGSILPKG VFPPDTVMRA QANTTTGGSS SPGGGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-119 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG028340.1 |