PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028190.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 343aa MW: 37075.6 Da PI: 7.6381

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028190.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.2	1.9e-10	42	68	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ TRIDC3BG028190.9 42 PGEANCVYYLRTGACGYGETCRYNHPR 68 57899********************96 PP
2	zf-CCCH	38.8	1.5e-12	90	116	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3BG028190.9 90 PGQPPCEYYMKNGTCKFGSNCKYNHPR 116 5899*********************96 PP
3	zf-CCCH	35.3	1.9e-11	137	161	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.9 137 EKECSYYIKTGHCKFGSTCKFHHPE 161 689********************96 PP
4	zf-CCCH	38.9	1.4e-12	291	317	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.9 291 PGQPECHHYMKTGTCKFGSTCKYNHPQ 317 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
DGGGGGAEGG RADAATGLEE SMWRLGLAGG EEAAGEGLPE RPGEANCVYY LRTGACGYGE 60 TCRYNHPRDR AAAFDGGTRT ARTVEYPERP GQPPCEYYMK NGTCKFGSNC KYNHPREGGS 120 VQPVVLNSCG YPLRLGEKEC SYYIKTGHCK FGSTCKFHHP EGPEHGVVSE TPNMYPPVQQ 180 LPVSSPLPYP PLASWQLGRP SVLPGSFFPG SYPPMMHPSA VMPMQGWNPY MPPINQVASA 240 GGQQTVQAGS LYGLSHQGPP SAVAYGSNYA SLSSSTWPSI DKQEVVFPER PGQPECHHYM 300 KTGTCKFGST CKYNHPQYLS TPRSNYMLSP LGLPIRPDLK VVQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

DGGGGGAEGG RADAATGLEE SMWRLGLAGG EEAAGEGLPE RPGEANCVYY LRTGACGYGE  60
TCRYNHPRDR AAAFDGGTRT ARTVEYPERP GQPPCEYYMK NGTCKFGSNC KYNHPREGGS  120
VQPVVLNSCG YPLRLGEKEC SYYIKTGHCK FGSTCKFHHP EGPEHGVVSE TPNMYPPVQQ  180
LPVSSPLPYP PLASWQLGRP SVLPGSFFPG SYPPMMHPSA VMPMQGWNPY MPPINQVASA  240
GGQQTVQAGS LYGLSHQGPP SAVAYGSNYA SLSSSTWPSI DKQEVVFPER PGQPECHHYM  300
KTGTCKFGST CKYNHPQYLS TPRSNYMLSP LGLPIRPDLK VVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	2e-87	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028190.9