PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC3BG028190.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 467aa MW: 49791.1 Da PI: 7.7671 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.6 | 2.7e-10 | 52 | 78 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ TRIDC3BG028190.8 52 PGEANCVYYLRTGACGYGETCRYNHPR 78 57899********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 100 | 126 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3BG028190.8 100 PGQPPCEYYMKNGTCKFGSNCKYNHPR 126 5899*********************96 PP | |||||||
3 | zf-CCCH | 34.8 | 2.7e-11 | 147 | 171 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.8 147 EKECSYYIKTGHCKFGSTCKFHHPE 171 689********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2.1e-12 | 301 | 327 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.8 301 PGQPECHHYMKTGTCKFGSTCKYNHPQ 327 5789*********************97 PP | |||||||
5 | zf-CCCH | 25.3 | 2.6e-08 | 350 | 372 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3BG028190.8 350 QPCLYYSQHGFCKFGPGCKFDHP 372 69********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence |
MMESYAASPK DGGGGGAEGG RADAATGLEE SMWRLGLAGG EEAAGEGLPE RPGEANCVYY 60 LRTGACGYGE TCRYNHPRDR AAAFDGGTRT ARTVEYPERP GQPPCEYYMK NGTCKFGSNC 120 KYNHPREGGS VQPVVLNSCG YPLRLGEKEC SYYIKTGHCK FGSTCKFHHP EGPEHGVVSE 180 TPNMYPPVQQ LPVSSPLPYP PLASWQLGRP SVLPGSFFPG SYPPMMHPSA VMPMQGWNPY 240 MPPINQVASA GGQQTVQAGS LYGLSHQGPP SAVAYGSNYA SLSSSTWPSI DKQEVVFPER 300 PGQPECHHYM KTGTCKFGST CKYNHPQYLS TPRSNYMLSP LGLPIRPGAQ PCLYYSQHGF 360 CKFGPGCKFD HPLGALSYSP SASSLGDVPI APYPLSLPVA PMAPSPSSSG LRPDYILAKD 420 SSANQPASPG TTFGNAGQLS KIYAPHMLLR PPTSATGATV TIHGGEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-111 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC3BG028190.8 |