PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG028190.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 463aa MW: 49266.9 Da PI: 9.4162 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.3 | 2.2e-12 | 96 | 122 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3BG028190.7 96 PGQPPCEYYMKNGTCKFGSNCKYNHPR 122 5899*********************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.7e-11 | 143 | 167 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.7 143 EKECSYYIKTGHCKFGSTCKFHHPE 167 689********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.7 297 PGQPECHHYMKTGTCKFGSTCKYNHPQ 323 5789*********************97 PP | |||||||
4 | zf-CCCH | 25.3 | 2.6e-08 | 346 | 368 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3BG028190.7 346 QPCLYYSQHGFCKFGPGCKFDHP 368 69********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence |
RPPRTAAGAA PRAAAPTLPP AWKSRCGGWG WPAERRPPGR GCRNGPARPT ASTTSARGPA 60 ATGRLAATTT LAIALPRPSF DGGTRTARTV EYPERPGQPP CEYYMKNGTC KFGSNCKYNH 120 PREGGSVQPV VLNSCGYPLR LGEKECSYYI KTGHCKFGST CKFHHPEGPE HGVVSETPNM 180 YPPVQQLPVS SPLPYPPLAS WQLGRPSVLP GSFFPGSYPP MMHPSAVMPM QGWNPYMPPI 240 NQVASAGGQQ TVQAGSLYGL SHQGPPSAVA YGSNYASLSS STWPSIDKQE VVFPERPGQP 300 ECHHYMKTGT CKFGSTCKYN HPQYLSTPRS NYMLSPLGLP IRPGAQPCLY YSQHGFCKFG 360 PGCKFDHPLG ALSYSPSASS LGDVPIAPYP LSLPVAPMAP SPSSSGLRPD YILAKDSSAN 420 QPASPGTTFG NAGQLSKIYA PHMLLRPPTS ATGATVTIHG GEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 2e-95 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG028190.7 |