PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028190.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 330aa MW: 35361.3 Da PI: 8.452

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028190.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.7	2.9e-11	9	34	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.5 9 GEKECSYYIKTGHCKFGSTCKFHHPE 34 6789********************96 PP
2	zf-CCCH	39	1.4e-12	164	190	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.5 164 PGQPECHHYMKTGTCKFGSTCKYNHPQ 190 5789*********************97 PP
3	zf-CCCH	25.9	1.7e-08	213	235	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3BG028190.5 213 QPCLYYSQHGFCKFGPGCKFDHP 235 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MKILFVMQGE KECSYYIKTG HCKFGSTCKF HHPEGPEHGV VSETPNMYPP VQQLPVSSPL 60 PYPPLASWQL GRPSVLPGSF FPGSYPPMMH PSAVMPMQGW NPYMPPINQV ASAGGQQTVQ 120 AGSLYGLSHQ GPPSAVAYGS NYASLSSSTW PSIDKQEVVF PERPGQPECH HYMKTGTCKF 180 GSTCKYNHPQ YLSTPRSNYM LSPLGLPIRP GAQPCLYYSQ HGFCKFGPGC KFDHPLGALS 240 YSPSASSLGD VPIAPYPLSL PVAPMAPSPS SSGLRPDYIL AKDSSANQPA SPGTTFGNAG 300 QLSKIYAPHM LLRPPTSATG ATVTIHGGEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	9e-74	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028190.5