PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028190.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 450aa MW: 48269.6 Da PI: 8.1952

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028190.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.6e-10	35	61	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ TRIDC3BG028190.4 35 PGEANCVYYLRTGACGYGETCRYNHPR 61 57899********************96 PP
2	zf-CCCH	38.3	2.2e-12	83	109	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3BG028190.4 83 PGQPPCEYYMKNGTCKFGSNCKYNHPR 109 5899*********************96 PP
3	zf-CCCH	34.9	2.6e-11	130	154	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.4 130 EKECSYYIKTGHCKFGSTCKFHHPE 154 689********************96 PP
4	zf-CCCH	38.4	2e-12	284	310	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.4 284 PGQPECHHYMKTGTCKFGSTCKYNHPQ 310 5789*********************97 PP
5	zf-CCCH	25.4	2.5e-08	333	355	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3BG028190.4 333 QPCLYYSQHGFCKFGPGCKFDHP 355 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MSLRAAASCV LAESMWRLGL AGGEEAAGEG LPERPGEANC VYYLRTGACG YGETCRYNHP 60 RDRAAAFDGG TRTARTVEYP ERPGQPPCEY YMKNGTCKFG SNCKYNHPRE GGSVQPVVLN 120 SCGYPLRLGE KECSYYIKTG HCKFGSTCKF HHPEGPEHGV VSETPNMYPP VQQLPVSSPL 180 PYPPLASWQL GRPSVLPGSF FPGSYPPMMH PSAVMPMQGW NPYMPPINQV ASAGGQQTVQ 240 AGSLYGLSHQ GPPSAVAYGS NYASLSSSTW PSIDKQEVVF PERPGQPECH HYMKTGTCKF 300 GSTCKYNHPQ YLSTPRSNYM LSPLGLPIRP GAQPCLYYSQ HGFCKFGPGC KFDHPLGALS 360 YSPSASSLGD VPIAPYPLSL PVAPMAPSPS SSGLRPDYIL AKDSSANQPA SPGTTFGNAG 420 QLSKIYAPHM LLRPPTSATG ATVTIHGGEF

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MSLRAAASCV LAESMWRLGL AGGEEAAGEG LPERPGEANC VYYLRTGACG YGETCRYNHP  60
RDRAAAFDGG TRTARTVEYP ERPGQPPCEY YMKNGTCKFG SNCKYNHPRE GGSVQPVVLN  120
SCGYPLRLGE KECSYYIKTG HCKFGSTCKF HHPEGPEHGV VSETPNMYPP VQQLPVSSPL  180
PYPPLASWQL GRPSVLPGSF FPGSYPPMMH PSAVMPMQGW NPYMPPINQV ASAGGQQTVQ  240
AGSLYGLSHQ GPPSAVAYGS NYASLSSSTW PSIDKQEVVF PERPGQPECH HYMKTGTCKF  300
GSTCKYNHPQ YLSTPRSNYM LSPLGLPIRP GAQPCLYYSQ HGFCKFGPGC KFDHPLGALS  360
YSPSASSLGD VPIAPYPLSL PVAPMAPSPS SSGLRPDYIL AKDSSANQPA SPGTTFGNAG  420
QLSKIYAPHM LLRPPTSATG ATVTIHGGEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028190.4