PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG028190.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 39597 Da PI: 8.8228 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.3 | 7.1e-10 | 7 | 27 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 r+++++GtCk+G++Ck++H++ TRIDC3BG028190.3 7 RYYMKNGTCKFGSNCKYNHPR 27 79*****************96 PP | |||||||
2 | zf-CCCH | 35.2 | 2e-11 | 48 | 72 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.3 48 EKECSYYIKTGHCKFGSTCKFHHPE 72 689********************96 PP | |||||||
3 | zf-CCCH | 38.8 | 1.6e-12 | 202 | 228 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.3 202 PGQPECHHYMKTGTCKFGSTCKYNHPQ 228 5789*********************97 PP | |||||||
4 | zf-CCCH | 25.7 | 1.9e-08 | 251 | 273 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3BG028190.3 251 QPCLYYSQHGFCKFGPGCKFDHP 273 69********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence |
QVSHRVRYYM KNGTCKFGSN CKYNHPREGG SVQPVVLNSC GYPLRLGEKE CSYYIKTGHC 60 KFGSTCKFHH PEGPEHGVVS ETPNMYPPVQ QLPVSSPLPY PPLASWQLGR PSVLPGSFFP 120 GSYPPMMHPS AVMPMQGWNP YMPPINQVAS AGGQQTVQAG SLYGLSHQGP PSAVAYGSNY 180 ASLSSSTWPS IDKQEVVFPE RPGQPECHHY MKTGTCKFGS TCKYNHPQYL STPRSNYMLS 240 PLGLPIRPGA QPCLYYSQHG FCKFGPGCKF DHPLGALSYS PSASSLGDVP IAPYPLSLPV 300 APMAPSPSSS GLRPDYILAK DSSANQPASP GTTFGNAGQL SKIYAPHMLL RPPTSATGAT 360 VTIHGGEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 2e-89 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG028190.3 |