PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG022340.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 31618.5 Da    PI: 9.1758
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG022340.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-314696151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  TRIDC3BG022340.2 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 96
                      79***********************************************95 PP
2K-box92.38.7e-311142114100
             K-box   4 ssgks.leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                       s++   ++e +a+++qqe++kL+++i++Lq ++ R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+e el+++n +L
  TRIDC3BG022340.2 114 SNS-GtVAEVNAQYYQQESSKLRQQISSLQnSNSRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKREMELHNDNIYL 205
                       333.25999*********************9899*********************************************************** PP

             K-box  95 rkklee 100
                       r+k+ e
  TRIDC3BG022340.2 206 RSKVSE 211
                       ***975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MMSMMADLSC GASGVTANDH QLAAPAPEDS AVAGSEKMGR GRIEIKRIEN TTNRQVTFCK  60
RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK ATIERYKKAN SDTSNSGTVA  120
EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK  180
NELMYAEVEY MQKREMELHN DNIYLRSKVS ENERGQQPMN MMASGSTSSE YDHMVPPYDS  240
RNFLQANILQ QQQQQQQQQH YSQQLQPTAL QLGQQYFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-104MIKC_MADS family protein