PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG022340.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31531.4 Da    PI: 9.1758
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG022340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-314696151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  TRIDC3BG022340.1 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 96
                      79***********************************************95 PP
2K-box95.21.1e-311142104100
             K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       s++   ++e +a+++qqe++kL+++i++Lq+++R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+e el+++n +Lr
  TRIDC3BG022340.1 114 SNS-GtVAEVNAQYYQQESSKLRQQISSLQNSNRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKREMELHNDNIYLR 205
                       333.25999************************************************************************************ PP

             K-box  96 kklee 100
                       +k+ e
  TRIDC3BG022340.1 206 SKVSE 210
                       **975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MMSMMADLSC GASGVTANDH QLAAPAPEDS AVAGSEKMGR GRIEIKRIEN TTNRQVTFCK  60
RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK ATIERYKKAN SDTSNSGTVA  120
EVNAQYYQQE SSKLRQQISS LQNSNRSLVR DSVSTMTLRD LKQLEGRLEK GIAKIRARKN  180
ELMYAEVEYM QKREMELHND NIYLRSKVSE NERGQQPMNM MASGSTSSEY DHMVPPYDSR  240
NFLQANILQQ QQQQQQQQHY SQQLQPTALQ LGQQYFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein