PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC3BG016300.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 246aa MW: 27467.8 Da PI: 8.7357 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 4.9e-21 | 110 | 170 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F++ n +ps++++++++++l +++e+++++WFqNrRa+ k+ TRIDC3BG016300.12 110 RQRWTPTQMQLQILESIFNQgNGTPSKQKIKDITAELsqhgQISETNIYNWFQNRRARSKR 170 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.1 | 7.8e-33 | 109 | 172 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++N+++WFQNr+aR+++kq TRIDC3BG016300.12 109 ARQRWTPTQMQLQILESIFNQGNGTPSKQKIKDITAELSQHGQISETNIYNWFQNRRARSKRKQ 172 789***********************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence |
PTAYSGRDPT PAEGPPFPLP TSQAVAMSSS GKFLARCISQ SWLRHCVKVM TDEQMEVLRK 60 QISIYATICE QLVEMHRALT AHQDSIAGMS LGNLYCDPLM VHGGQKITAR QRWTPTQMQL 120 QILESIFNQG NGTPSKQKIK DITAELSQHG QISETNIYNW FQNRRARSKR KQAASSLPNN 180 AESEAEGDEE SPTDKKPRSD GSQQQNMAVR AHNLKRISEM HRHFDAAERG HVCGPTMYGS 240 SNDTSR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 164 | 172 | RRARSKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-58 | WOX family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC3BG016300.12 |