PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG062500.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 710aa    MW: 79883.4 Da    PI: 6.6529
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG062500.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.6e-2392193199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   +
  TRIDC3AG062500.5  92 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--R 180
                       99*****************************7555544..58************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+v+v+r+
  TRIDC3AG062500.5 181 GESGELRVGVRRA 193
                       49999*****996 PP
2Auxin_resp111.58.5e-37218299183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  TRIDC3AG062500.5 218 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 299
                       89******************************************************************999.9********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    
RVGDLVFYFP QGHIEQVEAS MNQIAGNQMR LYDLPSKLLC RVINVELKAE ADTDEVYAQV  60
MLMPEPEQNE MAVDKSTSTT GATPPRPAVR SFCKTLTASD TSTHGGFSVL RRHADECLPP  120
LDMTQSPPTQ ELVAKDLHGM DWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR  180
GESGELRVGV RRAMRQLSNV PSSVISSHSM HLGVLATAWH AINTKSMFTV YYKPRTSPSE  240
FIIPYDQYME SVKNNYSIGM RFRMRFEGEE APEQRFTGTI VGSENLDQLW PESNWRSLKV  300
RWDEPSTIPR PDRVSPWKIE PASSPPVNPL PLSRVKRPRP NVPPVSPESS VLTKEVAAKI  360
DMDSAQAQQR NQNNMVLQGQ EHMTLRTNNL TASNESDATV QKPMMWSPSP NIGKNHASAF  420
QQRPSMDNWM QLGRCDASSG AQSFGDSQGF FMQTFDEAPN RHGSFKNQFQ DHSSARHFSD  480
PYTKMQTEAS EFHFWNSQST VYGNPRDQSQ GFRFEEHPSN WLRQQQQFSP VEQPRVIRPH  540
ASIAPVDLEK TREGSGFKIF GFKVDTTSAP SNHLSSTMAA IHEPVLQTQA SASLTQLQHA  600
HADCIPELSV STAGTTENEK SIQQAPHSSK DVQSKSHGAS TRSCTKVHKQ GVALGRSVDL  660
SKFGDYDELT AELDRMFEFD GELMSSNKDW QIVYTDPEGD MMLVGDDPWE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336340KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein