PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG062500.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 770aa    MW: 86458.7 Da    PI: 6.6815
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG062500.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-2399200199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   +
  TRIDC3AG062500.4  99 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--R 187
                       99*****************************7555544..58************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+v+v+r+
  TRIDC3AG062500.4 188 GESGELRVGVRRA 200
                       49999*****996 PP
2Auxin_resp111.39.5e-37225306183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  TRIDC3AG062500.4 225 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 306
                       89******************************************************************999.9********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    
GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ IAGNQMRLYD LPSKLLCRVI NVELKAEADT  60
DEVYAQVMLM PEPEQNEMAV DKSTSTTGAT PPRPAVRSFC KTLTASDTST HGGFSVLRRH  120
ADECLPPLDM TQSPPTQELV AKDLHGMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG  180
DAFIFLRGES GELRVGVRRA MRQLSNVPSS VISSHSMHLG VLATAWHAIN TKSMFTVYYK  240
PRTSPSEFII PYDQYMESVK NNYSIGMRFR MRFEGEEAPE QRFTGTIVGS ENLDQLWPES  300
NWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNVP PVSPESSVLT  360
KEVAAKIDMD SAQAQQRNQN NMVLQGQEHM TLRTNNLTAS NESDATVQKP MMWSPSPNIG  420
KNHASAFQQR PSMDNWMQLG RCDASSGAQS FGDSQGFFMQ TFDEAPNRHG SFKNQFQDHS  480
SARHFSDPYT KMQTEASEFH FWNSQSTVYG NPRDQSQGFR FEEHPSNWLR QQQQFSPVEQ  540
PRVIRPHASI APVDLEKTRE GSGFKIFGFK VDTTSAPSNH LSSTMAAIHE PVLQTQASAS  600
LTQLQHAHAD CIPELSVSTA GTTENEKSIQ QAPHSSKDVQ SKSHGASTRS CTKVHKQGVA  660
LGRSVDLSKF GDYDELTAEL DRMFEFDGEL MSSNKDWQIV YTDPEGDMML VGDDPWEEFC  720
NIVRKIFIYT KEEVQKMNSK SSTPRKEEGS ADADGANEKA RPATSSHLDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343347KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein