PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG062500.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 798aa    MW: 89275 Da    PI: 6.577
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG062500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.6e-23129230199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   +
  TRIDC3AG062500.1 129 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--R 217
                       99*****************************7555544..58************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+v+v+r+
  TRIDC3AG062500.1 218 GESGELRVGVRRA 230
                       49999*****996 PP
2Auxin_resp111.21e-36255336183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  TRIDC3AG062500.1 255 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 336
                       89******************************************************************999.9********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    
MPPAAMAPPQ APSAGTPGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ  60
IAGNQMRLYD LPSKLLCRVI NVELKAEADT DEVYAQVMLM PEPEQNEMAV DKSTSTTGAT  120
PPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMDWR  180
FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGES GELRVGVRRA MRQLSNVPSS  240
VISSHSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSIGMRFR  300
MRFEGEEAPE QRFTGTIVGS ENLDQLWPES NWRSLKVRWD EPSTIPRPDR VSPWKIEPAS  360
SPPVNPLPLS RVKRPRPNVP PVSPESSVLT KEVAAKIDMD SAQAQQRNQN NMVLQGQEHM  420
TLRTNNLTAS NESDATVQKP MMWSPSPNIG KNHASAFQQR PSMDNWMQLG RCDASSGAQS  480
FGDSQGFFMQ TFDEAPNRHG SFKNQFQDHS SARHFSDPYT KMQTEASEFH FWNSQSTVYG  540
NPRDQSQGFR FEEHPSNWLR QQQQFSPVEQ PRVIRPHASI APVDLEKTRE GSGFKIFGFK  600
VDTTSAPSNH LSSTMAAIHE PVLQTQASAS LTQLQHAHAD CIPELSVSTA GTTENEKSIQ  660
QAPHSSKDVQ SKSHGASTRS CTKVHKQGVA LGRSVDLSKF GDYDELTAEL DRMFEFDGEL  720
MSSNKDWQIV YTDPEGDMML VGDDPWEEFC NIVRKIFIYT KEEVQKMNSK SSTPRKEEGS  780
ADADGANEKA RPATSSHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein