PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG057890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28080.8 Da PI: 7.081 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.5e-30 | 48 | 98 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskR+ngilKKA+E+SvLCdaev v++fss gkly+++s TRIDC3AG057890.1 48 KRIENQSNRQVTFSKRKNGILKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 98 79***********************************************96 PP | |||||||
2 | K-box | 72.6 | 1.2e-24 | 110 | 202 | 1 | 93 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++sgk l+++k++s + e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k++e++ + +++ ++ e+e++ + TRIDC3AG057890.1 110 YQTNSGKILWDEKHKSFSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQMEHYDRLMKHGKMLEDENKLLAFK 202 79999999******************************************************************9999999999998876655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
LTSVPTTAIP QSHHARTGPQ STRGNEPFLA PPEDEGGGGM GRGKIEIKRI ENQSNRQVTF 60 SKRKNGILKK AKEISVLCDA EVGVVVFSSA GKLYDFCSPK TSLSRILEKY QTNSGKILWD 120 EKHKSFSAEI DRIKKENDNM QIELRHLKGE DLNSLQPKEL IMIEEALDNG LTSLHEKQME 180 HYDRLMKHGK MLEDENKLLA FKVHQYDIAL SGSMRDLELG YHPDRDFAAQ MPITFRVQPS 240 HPNLQEDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 7e-64 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG057890.1 |