PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG057280.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22368.5 Da PI: 10.5812 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.2 | 2.9e-43 | 34 | 132 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v+vi+ lq++l+ql+++ TRIDC3AG057280.5 34 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAVISILQRNLRQLQQD 126 7******************************************************************************************** PP DUF260 94 lallke 99 la++k TRIDC3AG057280.5 127 LARAKY 132 *99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
SASSLPAPGG SVITLAASSA GGNGAGGVCG TGSPCAACKF LRRKCQPDCV FAPYFPPDNP 60 QKFVHVHRVF GASNVTKLLN ELHPYQREDA VNSLAYEADM RLRDPVYGCV AVISILQRNL 120 RQLQQDLARA KYELSKYQTV ILVSVGGGAE RVAVDGGVHR QRGAERRGEL HQRWALRGAR 180 LRRRGHGLRA RPSVRCRADA VQELRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 7e-56 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG057280.5 |