PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG057280.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 270aa MW: 29982.4 Da PI: 12.0186

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG057280.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.3	5.4e-43	38	136	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v+vi+ lq++l+ql+++ TRIDC3AG057280.2 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAVISILQRNLRQLQQD 130 7******************************************************************************************** PP DUF260 94 lallke 99 la++k TRIDC3AG057280.2 131 LARAKY 136 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MASSSASSLP APGGSVITLA ASSAGGNGAG GVCGTGSPCA ACKFLRRKCQ PDCVFAPYFP 60 PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV YGCVAVISIL 120 QRNLRQLQQD LARAKYELSK YQWWCLTVIL VSVGGGAERV AVDGGVHRQR GAERRGELHQ 180 RWALRGARLR RRGHGLRARP SVRCRADAVQ ELRGGRAHRE AGPERRLRVR VLGGRIGWRR 240 VGARSRHARR LAVPEARHRR QRREGRRRAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	2e-54	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG057280.2