PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC3AG043920.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 670aa MW: 73162 Da PI: 8.2023 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 2 | 43 | 15 | 56 |
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 L+ +F+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k TRIDC3AG043920.3 2 LNMVFKESPHPDEKQRQQLSKQLGLSPRQVKFWFQNRRTQIK 43 899***********************************9877 PP | |||||||
2 | START | 186.9 | 1.1e-58 | 179 | 406 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++el ++ +++ep+Wv+s+ +++n+de+++ f ++++ s+ea+r++gvv ++++lv ++d++ qW+e ++ k TRIDC3AG043920.3 179 ELAGRALEELKTMSSSGEPLWVRSVetgrDILNYDEYVRLFRRDDGpgdrrasWSVEASRETGVVYLDATNLVHAFMDVN-QWKELFPsmvsK 270 578999*************************************999******99**************************.****9999999* PP EEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 79 aetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 a+tl+vi++g ga+qlm+ae q+l+p+vp R+f+f+Ry+++l a++w++vdvS d + +s++v + + pSg++ie+ nghs+ TRIDC3AG043920.3 271 ASTLDVIRTGddddvhdGAVQLMFAEVQMLTPMVPtREFYFARYCKKLAAEKWAVVDVSFDKAEADVGTSPLVTCWKNPSGCIIEEQTNGHSR 363 ***************************************************************99999************************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh+ +++ +++++r + sgla+ga++wvatlq qce+ TRIDC3AG043920.3 364 VTWVEHTRCRECAVPSMYRAVTASGLAFGARRWVATLQLQCER 406 *****************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 670 aa Download sequence |
MLNMVFKESP HPDEKQRQQL SKQLGLSPRQ VKFWFQNRRT QIKATQERHE NSLLKSELEN 60 LQKENRAMRQ LAKGPSRCPS CGAAAASTDG FDAAAANQEQ LLQLENAKLR AEVLMLWKWN 120 PFQVEKLRGA LGTAAADGAA SPAFSPPFSA ATAQMSGNRS PFEVYGAGFV GRDRQSVLEL 180 AGRALEELKT MSSSGEPLWV RSVETGRDIL NYDEYVRLFR RDDGPGDRRA SWSVEASRET 240 GVVYLDATNL VHAFMDVNQW KELFPSMVSK ASTLDVIRTG DDDDVHDGAV QLMFAEVQML 300 TPMVPTREFY FARYCKKLAA EKWAVVDVSF DKAEADVGTS PLVTCWKNPS GCIIEEQTNG 360 HSRVTWVEHT RCRECAVPSM YRAVTASGLA FGARRWVATL QLQCERMVFW VATNVPTRDS 420 NGVSTLAGRR SVLKLAHRMT SSLCRVIGGS RGLAWSRAPR AGAGDVRLTS RTNAGDPGEP 480 QGLIACAVLS TWLPVSPTSL LDFLRDESRR PEWDVTLAGR AVQRRVNLTK GKDRCNCVTA 540 YVSSRADEQG GEWIVQDSCT NPCESIVAYA PVDAAVLQPV IRGHDSSGVA LLPCGFAVVP 600 DGLESRPAVI TSRKEDGAVA GAGSLVTVAF QVLASSSPAA ALSPESAETV TSLASCTLRR 660 VKKALGCQDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79840.1 | 1e-174 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC3AG043920.3 |