PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG042060.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22459.8 Da    PI: 9.529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG042060.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-22957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      kri+n ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  TRIDC3AG042060.1  9 KRIDNPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYQY 57
                      79*********************************************99 PP
2K-box32.24.4e-1272169198
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       y++s+++++++   ++ ++el+k+ k  + L++e+R +  +d e+ ++  L  Le++Le ++ k+Rs K++ +  ++++l ++ +  q e   
  TRIDC3AG042060.1  72 YEASTHTKVWSDIRQERRRELEKVAKMCDLLEKELRFMTVDDGERYTVPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENMIRGKQAERYG 164
                       56778888************************************************************************9999988888877 PP

             K-box  94 Lrkkl 98 
                       L  kl
  TRIDC3AG042060.1 165 LCDKL 169
                       77665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP  60
TVPSVKEFVE RYEASTHTKV WSDIRQERRR ELEKVAKMCD LLEKELRFMT VDDGERYTVP  120
SLAALEHNLE AAMHKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKVVEG  180
GSTSLNNGLD LKLGFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-22MIKC_MADS family protein