PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG040620.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 821aa MW: 90197.1 Da PI: 6.4769

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG040620.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.2	1.9e-10	592	631	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e LA++lgLt q++ WF R TRIDC3AG040620.4 592 QKLKAYFEKEPYPSRPAKESLAQELGLTFHQITRWFSSTR 631 78**********************************8776 PP
2	PHD	42.1	2e-14	241	296	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3AG040620.4 241 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 296 7****65555****77*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD 60 KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN 120 EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW 180 KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI 240 FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI 300 DLLNELQGST LAMHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDENK 360 SSAEDGDEGS DSDDLDFITS SDESEPSKKK RSESKNKNTV NDLALPSDDS EDDDFDPEGP 420 NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS 480 VLPASNRRQV GHLDYKKLYD EAYGKETTDS SDEEEWSGHS PNGNPEDSDT DSFAGPLKPA 540 KTRRARGGRQ NNERTPQSER HSGSVSEQHP EVLSNGTSST ARKKSYGPIV NQKLKAYFEK 600 EPYPSRPAKE SLAQELGLTF HQITRWFSST RHYSRVSAAK KGKRLENYTA ENNDGIAADS 660 IQQREPNGSV LGKPNVDRNG IVSEERMAQK NLDEGEREDT PFRQHIGCEQ TLDGTPPANK 720 HNTANSRNDT SRNAEDTPLG QDIGCEQTVA AVNQNCTIGS SNVGSPKGAP GGNKRLKNSP 780 RSVGSPRRGS AEKNIPGLEH VDEARRKAIL RELRKMKAAG R

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD  60
KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN  120
EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW  180
KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI  240
FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI  300
DLLNELQGST LAMHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDENK  360
SSAEDGDEGS DSDDLDFITS SDESEPSKKK RSESKNKNTV NDLALPSDDS EDDDFDPEGP  420
NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS  480
VLPASNRRQV GHLDYKKLYD EAYGKETTDS SDEEEWSGHS PNGNPEDSDT DSFAGPLKPA  540
KTRRARGGRQ NNERTPQSER HSGSVSEQHP EVLSNGTSST ARKKSYGPIV NQKLKAYFEK  600
EPYPSRPAKE SLAQELGLTF HQITRWFSST RHYSRVSAAK KGKRLENYTA ENNDGIAADS  660
IQQREPNGSV LGKPNVDRNG IVSEERMAQK NLDEGEREDT PFRQHIGCEQ TLDGTPPANK  720
HNTANSRNDT SRNAEDTPLG QDIGCEQTVA AVNQNCTIGS SNVGSPKGAP GGNKRLKNSP  780
RSVGSPRRGS AEKNIPGLEH VDEARRKAIL RELRKMKAAG R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	137	KKKVPNEPVNDSTAAQPAARKRK
2	133	139	ARKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-81	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG040620.4