PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG040620.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 607aa MW: 66362.8 Da PI: 4.4257

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG040620.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.7	1.3e-10	378	417	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e LA++lgLt q++ WF R TRIDC3AG040620.12 378 QKLKAYFEKEPYPSRPAKESLAQELGLTFHQITRWFSSTR 417 78**********************************8776 PP
2	PHD	42.7	1.3e-14	27	82	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3AG040620.12 27 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 82 7****65555****77*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MDSLLLEGKL DESLFDSEGE ISSEDIFCAI CASKHVTLKN DIILCDGVCD RGFHQKCLNP 60 PLLAEDIPQG DEGWLCPACD CKLDCIDLLN ELQGSTLAMH DSWEKVFPES TSNGLNQIGA 120 SDLPSDDSEE DYDPTLAEGD TVDENKSSAE DGDEGSDSDD LDFITSSDES EPSKKKRSES 180 KNKNTVNDLA LPSDDSEDDD FDPEGPNSSE DQKTKTNSDE SDFTSDSDDF CAEISKSSGK 240 DKVSAPSFSD QTNGVDIMEA ELEQDSVLPA SNRRQVGHLD YKKLYDEAYG KETTDSSDEE 300 EWSGHSPNGN PEDSDTDSFA GPLKPAKTRR ARGGRQNNER TPQSERHSGS VSEQHPEVLS 360 NGTSSTARKK SYGPIVNQKL KAYFEKEPYP SRPAKESLAQ ELGLTFHQIT RWFSSTRHYS 420 RVSAAKKGKR LENYTAENND GIAADSIQQR EPNGSVLGKP NVDRNGIVSE ERMAQKNLDE 480 GEREDTPFRQ HIGCEQTLDG TPPANKHNTA NSRNDTSRNA EDTPLGQDIG CEQTVAAVNQ 540 NCTIGSSNVG SPKGAPGGNK RLKNSPRSVG SPRRGSAEKN IPGLEHVDEA RRKAILRELR 600 KMKAAGR

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MDSLLLEGKL DESLFDSEGE ISSEDIFCAI CASKHVTLKN DIILCDGVCD RGFHQKCLNP  60
PLLAEDIPQG DEGWLCPACD CKLDCIDLLN ELQGSTLAMH DSWEKVFPES TSNGLNQIGA  120
SDLPSDDSEE DYDPTLAEGD TVDENKSSAE DGDEGSDSDD LDFITSSDES EPSKKKRSES  180
KNKNTVNDLA LPSDDSEDDD FDPEGPNSSE DQKTKTNSDE SDFTSDSDDF CAEISKSSGK  240
DKVSAPSFSD QTNGVDIMEA ELEQDSVLPA SNRRQVGHLD YKKLYDEAYG KETTDSSDEE  300
EWSGHSPNGN PEDSDTDSFA GPLKPAKTRR ARGGRQNNER TPQSERHSGS VSEQHPEVLS  360
NGTSSTARKK SYGPIVNQKL KAYFEKEPYP SRPAKESLAQ ELGLTFHQIT RWFSSTRHYS  420
RVSAAKKGKR LENYTAENND GIAADSIQQR EPNGSVLGKP NVDRNGIVSE ERMAQKNLDE  480
GEREDTPFRQ HIGCEQTLDG TPPANKHNTA NSRNDTSRNA EDTPLGQDIG CEQTVAAVNQ  540
NCTIGSSNVG SPKGAPGGNK RLKNSPRSVG SPRRGSAEKN IPGLEHVDEA RRKAILRELR  600
KMKAAGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	7e-47	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG040620.12