PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG038170.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 279aa    MW: 30543.8 Da    PI: 5.5834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG038170.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  TRIDC3AG038170.4 15 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 62
                      678*******************************************97 PP
2Myb_DNA-binding48.12.6e-1568112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  TRIDC3AG038170.4  68 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 112
                       899*******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
AGTGGGGGVQ QKLRKGLWSP EEDEKLYNHI IRYGVGCWSS VPKLAGLQRC GKSCRLRWIN  60
YLRPDLKRGS FSQQEEDAIV GLHEILGNRW SQIASHLPGR TDNEIKNFWN SCLKKKLRQR  120
GIDPSTHKPI SGVAGVEPDQ ASKDERPQGA DGIALKQQQQ QVFDPFPVAD TFGAGFDGAG  180
MPLYDHLGGK DAAGFVDYSS VLDVSENLGY GESSSNSSNW NSAPEASNAL EGEALHWASE  240
SKVEPFAAYA GDEDGKFALP CHGQQEHSMA HFDFNLEYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.15e-73MYB family protein