PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG034780.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 330aa MW: 35940.4 Da PI: 8.6949

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG034780.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.5	1.4e-15	256	281	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg TRIDC3AG034780.4 256 FKTELCNKWEETGACPYGDQCQFAHG 281 79***********************9 PP
2	zf-CCCH	18.3	4e-06	294	319	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ TRIDC3AG034780.4 294 YKTEVCRMVLNGEVCPYGHRCHFRHS 319 9****999966********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
ISPANADRLR SAFELKPYGF GDQRLSSSPR YLPGGDDGLY RCSSPFSPSL GFSSPSPLAT 60 SVSLSPSSSA SLVDDGDYDG AAAAAATGHR LQLARLALQY QEVADRYELC LSHLAEAVDE 120 AAILRRENAE LRVANSDLAR RVALLGGKET AAVVIADEIR RFRLGEHKGA SKQRAPEKLA 180 VLPKSISVRS NDYLKMNQAA PAAATPAAYN RKPSSIVDRQ QRAYSGLGAD GGKKGEEQKS 240 KQDAAGELDV YNQGMFKTEL CNKWEETGAC PYGDQCQFAH GVSELRPVIR HPRYKTEVCR 300 MVLNGEVCPY GHRCHFRHSL TAAERLLRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-59	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG034780.4