PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG033300.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 20054.1 Da PI: 6.3465 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 4.8e-11 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++rt tCky ++CkF H++ TRIDC3AG033300.3 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150 7899********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MSGYPFYPYG RGGVGDDASA MSDYPFHPYG RGGVGDNAAA RYSSYEIDLI AARYAGDPSS 60 YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSDA FYSPNTMVKR PRLESSLPIY 120 PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP 180 VS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-42 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG033300.3 |