PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG033300.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 259aa MW: 28231.6 Da PI: 7.9779

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG033300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.3	7.9e-11	125	150	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++rt tCky ++CkF H++ TRIDC3AG033300.1 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150 7899********************97 PP
2	zf-CCCH	39	1.4e-12	174	200	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff +tG+Ck+G++CkF+H++ TRIDC3AG033300.1 174 PGEPNCPFFVKTGECKFGSKCKFNHPK 200 5799*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MSGYPFYPYG RGGVGDDASA MSDYPFHPYG RGGVGDNAAA RYSSYEIDLI AARYAGDPSS 60 YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSDA FYSPNTMVKR PRLESSLPIY 120 PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP 180 FFVKTGECKF GSKCKFNHPK KKDDGTVAGP GDKESLFSAN STLPVKPSEP CPESLISGNS 240 TLPVKPSKPC PVKGYPLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-56	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG033300.1