PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG033290.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 248aa MW: 27136.9 Da PI: 8.3554 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.8 | 2.1e-09 | 67 | 93 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+ +tG C yG +C+F+H++ TRIDC3AG033290.2 67 PGEVDCSFYIKTGSCMYGRTCRFNHPE 93 57899********************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.8e-11 | 137 | 161 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ ++CkF+H+ TRIDC3AG033290.2 137 GETVCDFYKKTGFCKFSEKCKFHHP 161 6789********************9 PP | |||||||
3 | zf-CCCH | 40 | 6.4e-13 | 194 | 217 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3AG033290.2 194 EACAYYMKTGACKFGVQCKFDHPP 217 78********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
GKCKLGTNCK FIHAKDMEPP SSGGNESENT ATAEAAGHHG AVHDSVSAKK LAPVALEHNS 60 KGMPIRPGEV DCSFYIKTGS CMYGRTCRFN HPERHIQASV VPGEMLNPAV KFLPSFDFRV 120 THVPIEPEPI TYPQRPGETV CDFYKKTGFC KFSEKCKFHH PVDRSAPDSI AKWEPSQQPV 180 TLTVAGFPRR EDAEACAYYM KTGACKFGVQ CKFDHPPLGE AIAKVSKHGE GKEGGKKKVV 240 GLSYVLEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-64 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG033290.2 |