PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG024970.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 179aa MW: 19626.3 Da PI: 8.4651 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40 | 6.3e-13 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3AG024970.6 21 PGQPPCEYYMKNGTCKFGSNCKYNHPR 47 5899*********************96 PP | |||||||
2 | zf-CCCH | 36.6 | 7.7e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.6 68 EKECSYYIKTGHCKFGSTCKFHHPE 92 689********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
APPRFDGGTR TARTVEYPER PGQPPCEYYM KNGTCKFGSN CKYNHPREGG SVQPVVLNSC 60 GYPLRLGEKE CSYYIKTGHC KFGSTCKFHH PEGPEHGVVS ETPNMYPPVQ QLPVSSPLPY 120 PPLASWQLGR PSVLPGSFFP GSYPPMMHPS AVMPMQGWNP YMPPINQVAS AGGQQTVQA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 6e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG024970.6 |