PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG024970.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 339aa MW: 36708.2 Da PI: 7.7906 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.2 | 1.8e-10 | 42 | 68 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ TRIDC3AG024970.3 42 PGEANCVYYLRTGACGYGETCRYNHPR 68 57899********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 90 | 116 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3AG024970.3 90 PGQPPCEYYMKNGTCKFGSNCKYNHPR 116 5899*********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.8e-11 | 137 | 161 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.3 137 EKECSYYIKTGHCKFGSTCKFHHPE 161 689********************96 PP | |||||||
4 | zf-CCCH | 38.9 | 1.4e-12 | 291 | 317 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3AG024970.3 291 PGQPECHHYMKTGTCKFGSTCKYNHPQ 317 5789*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
SPKDGGAEGG RADAATGLEE SMWRLGLAGG EEAAGEGLPE RPGEANCVYY LRTGACGYGE 60 TCRYNHPRDR AAAFDGGTRT ARTVEYPERP GQPPCEYYMK NGTCKFGSNC KYNHPREGGS 120 VQPVVLNSCG YPLRLGEKEC SYYIKTGHCK FGSTCKFHHP EGPEHGVVSE TPNMYPPVQQ 180 LPVSSPLPYP PLASWQLGRP SVLPGSFFPG SYPPMMHPSA VMPMQGWNPY MPPINQVASA 240 GGQQTVQAGP LYGLSHQGPP SAVAYGSNYA SLSSSTWPSS DKQEVVFPER PGQPECHHYM 300 KTGTCKFGST CKYNHPQYLS TPRSNYMLSP LGLPIRPCS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 2e-85 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG024970.3 |