PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG024970.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 38417.7 Da PI: 8.6198 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3e-08 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +++GtCk+G++Ck++H++ TRIDC3AG024970.2 1 MKNGTCKFGSNCKYNHPR 18 89**************96 PP | |||||||
2 | zf-CCCH | 35.3 | 2e-11 | 39 | 63 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.2 39 EKECSYYIKTGHCKFGSTCKFHHPE 63 689********************96 PP | |||||||
3 | zf-CCCH | 38.8 | 1.5e-12 | 193 | 219 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3AG024970.2 193 PGQPECHHYMKTGTCKFGSTCKYNHPQ 219 5789*********************97 PP | |||||||
4 | zf-CCCH | 25.8 | 1.9e-08 | 242 | 264 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3AG024970.2 242 QPCLYYSQHGFCKFGPGCKFDHP 264 69********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MKNGTCKFGS NCKYNHPREG GSVQPVVLNS CGYPLRLGEK ECSYYIKTGH CKFGSTCKFH 60 HPEGPEHGVV SETPNMYPPV QQLPVSSPLP YPPLASWQLG RPSVLPGSFF PGSYPPMMHP 120 SAVMPMQGWN PYMPPINQVA SAGGQQTVQA GPLYGLSHQG PPSAVAYGSN YASLSSSTWP 180 SSDKQEVVFP ERPGQPECHH YMKTGTCKFG STCKYNHPQY LSTPRSNYML SPLGLPIRPG 240 AQPCLYYSQH GFCKFGPGCK FDHPLGALSY SPSASSLGDV PIAPYPLSLP VAPMAPSPLS 300 SGLRPDYILA KDSSANQPAS PGTTFGNAGQ LSKIYAPHML LRPPTSATGA TVTIHGGEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 6e-88 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG024970.2 |