PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG024940.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 413aa MW: 44526 Da PI: 8.4028 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.3e-10 | 2 | 23 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +++rtG C +GdrC+++H++ TRIDC3AG024940.3 2 CIYYLRTGACGFGDRCRYNHPR 23 ********************96 PP | |||||||
2 | zf-CCCH | 39.9 | 6.9e-13 | 48 | 72 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3AG024940.3 48 QPVCEYYMKTGTCKFGSNCKYHHPK 72 789********************96 PP | |||||||
3 | zf-CCCH | 40.1 | 6.2e-13 | 92 | 117 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3AG024940.3 92 GEKECSYYMKTGQCKFGSTCKFHHPE 117 7899********************96 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 245 | 271 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3AG024940.3 245 PGQPECQYYMRTGDCKFGATCKYHHPR 271 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.2 | 4.2e-11 | 294 | 317 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3AG024940.3 294 QPCSYYAQNGYCRYGVACKYDHPM 317 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence |
DCIYYLRTGA CGFGDRCRYN HPRDRGGTEF GGGAKNAVAL DYPERLGQPV CEYYMKTGTC 60 KFGSNCKYHH PKQDGSVQPV MLNSNGFPLR PGEKECSYYM KTGQCKFGST CKFHHPEFGG 120 VPVTPGIYPP LQSSTVPSPH PYAPLTNWQM GRPPVVPGSY MPGSYTPMML SSGMIPLQGW 180 SPYPASVNPV ASGGVQQTVQ AGPMYGIGHH GSSSTIAYGG PYMPYSSSTI QSSNNQQEHG 240 FPERPGQPEC QYYMRTGDCK FGATCKYHHP RDWSSPKSNY MFSPFCLPLR PGAQPCSYYA 300 QNGYCRYGVA CKYDHPMGTL GYSSSPFPLS DVPIAPYPLG FSIATLAPSS SSQDLRPEYI 360 SAKDPSVNQV GSPVAASEPS GSILPKGVFP PDTVMRAQTN TTTGGSSSPG GGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-118 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG024940.3 |