PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG024940.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 382aa MW: 41320.4 Da PI: 8.4947 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 11 | 36 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ TRIDC3AG024940.2 11 DQADCIYYLRTGACGFGDRCRYNHPR 36 6789********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6.2e-13 | 61 | 85 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3AG024940.2 61 QPVCEYYMKTGTCKFGSNCKYHHPK 85 789********************96 PP | |||||||
3 | zf-CCCH | 40.2 | 5.6e-13 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3AG024940.2 105 GEKECSYYMKTGQCKFGSTCKFHHPE 130 7899********************96 PP | |||||||
4 | zf-CCCH | 38.8 | 1.6e-12 | 258 | 284 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3AG024940.2 258 PGQPECQYYMRTGDCKFGATCKYHHPR 284 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.4 | 3.8e-11 | 307 | 330 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3AG024940.2 307 QPCSYYAQNGYCRYGVACKYDHPM 330 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence |
GDGARLPERP DQADCIYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNA VALDYPERLG 60 QPVCEYYMKT GTCKFGSNCK YHHPKQDGSV QPVMLNSNGF PLRPGEKECS YYMKTGQCKF 120 GSTCKFHHPE FGGVPVTPGI YPPLQSSTVP SPHPYAPLTN WQMGRPPVVP GSYMPGSYTP 180 MMLSSGMIPL QGWSPYPASV NPVASGGVQQ TVQAGPMYGI GHHGSSSTIA YGGPYMPYSS 240 STIQSSNNQQ EHGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDWSSPK SNYMFSPFCL 300 PLRPGAQPCS YYAQNGYCRY GVACKYDHPM AKDPSVNQVG SPVAASEPSG SILPKGVFPP 360 DTVMRAQTNT TTGGSSSPGG GR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-114 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG024940.2 |