PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG022500.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 166aa MW: 17607.1 Da PI: 11.577 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.6e-09 | 67 | 89 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd C++ H++ TRIDC3AG022500.4 67 VCNHFVRTGTCKFGDACRYFHPK 89 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence |
AAGQVLLRLL RQGVPGHRRR PQAPPPGRPA PPRQRPLVRL RPPPRLQSHG GPSPLLQPDG 60 AILGQGVCNH FVRTGTCKFG DACRYFHPKP HAVNPALAPS GPVPGAMGQQ SNFLGTQPNF 120 VGYPAVEGNS FSGNILTGHT SWGNLPPSLQ PPPEGGYPPL PFVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG022500.4 |