PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG022500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 136aa MW: 14465.1 Da PI: 7.6383 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.4e-09 | 37 | 59 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd C++ H++ TRIDC3AG022500.1 37 VCNHFVRTGTCKFGDACRYFHPK 59 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence |
QHHRASALWY DSVRRQESHG GPSPLLQPDG AILGQGVCNH FVRTGTCKFG DACRYFHPKP 60 HAVNPALAPS GPVPGAMGQQ SNFLGTQPNF VGYPAVEGNS FSGNILTGHT SWGNLPPSLQ 120 PPPEGGYPPL PFVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG022500.1 |