PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG017280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 273aa MW: 30914.7 Da PI: 9.1754 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 46 | 96 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ TRIDC3AG017280.1 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 96 79***********************************************95 PP | |||||||
2 | K-box | 92 | 1.1e-30 | 114 | 211 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 s++ ++e +a+++qqe++kL+++i++Lq ++ R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+e elq++n +L TRIDC3AG017280.1 114 SNS-GtVAEVNAQYYQQESSKLRQQISSLQnSNSRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKREMELQNDNIYL 205 333.25999*********************9899*********************************************************** PP K-box 95 rkklee 100 r+k+ e TRIDC3AG017280.1 206 RSKVSE 211 ***975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MMSMMADLSC GASGVTVNDH QLAAPAPEDS AAAGSEKMGR GRIEIKRIEN TTNRQVTFCK 60 RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK ATIERYKKAN SDTSNSGTVA 120 EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK 180 NELMYAEVEY MQKREMELQN DNIYLRSKVS ENERGQQPVN MMASGSASSE YDHMVSPYDS 240 RNFLQANIMQ QQQQHYSQQL QPTALQLGQQ YFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-102 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG017280.1 |