PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG006220.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 356aa    MW: 38541.3 Da    PI: 9.7541
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG006220.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.8e-1261109155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r +r++lg+f  ++ Aa+a++ a+++++g
  TRIDC3AG006220.1  61 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEDSAARAYDVAALRYRG 109
                       689***9788.8*********......44**********99*************98 PP
2B394.85.9e-30175270187
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  TRIDC3AG006220.1 175 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSC 267
                       89*************************9987776644455999************************************************96 PP

                       -SS CS
                B3  85 dgr 87 
                       +  
  TRIDC3AG006220.1 268 SAY 270
                       543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MGVEILSSTG EHSSQYSSGA VSTATTESGV GGRLPTAPSL PVAIADESVT SRSASAQSAS  60
SRFKGVVPQP NGRWGAQIYE RHARVWLGTF PDEDSAARAY DVAALRYRGR EATTNFPCAA  120
AEAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGMG ARAQPTPSWA REPLFEKAVT  180
PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGKGVLLN FEDGEGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVREKGLGAG DSIVFSCSAY GQEKQFFIDC KKNKTMASCP ADGGAATASP  300
PVAEAANGEQ VRVVRLFGVD IAGEKRGRVA QAEQELFKRQ CVAHSQHSPA LGAFVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-91RAV family protein