PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG083690.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 693aa MW: 77675.5 Da PI: 5.3504

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG083690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	97	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C Gd+C+F+Hgp TRIDC2BG083690.1 97 MVPCYYFQK-GNCIKGDKCPFSHGP 120 789****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
AEAKPLTPEE EALRRNTDCV YFLASPLTCK KGNQCDFRHS EGARMNPRDC YYWLNGNCLN 60 PKCSFRHPPI DGMFGAPTPG IPAVSSHYAA YNSGKQMVPC YYFQKGNCIK GDKCPFSHGP 120 QPAGNNPPEQ VAKVSSFPLE QPQTQKNEFL GVKEFAQTNH LIQQGGPIIG DRSKSVNRVA 180 ANFARTAAAA IPADLASSAV KSLPKSGRVK NSMPAANKSV GTSSGEDHPE CYQNNLPVET 240 DPMQDWSQPY QTPPQDDMPE DSRDADDLLG ESSPGFDVLV ANDADAGAYM HDPDDFGRDI 300 YPVEDYEYAP ADFEIQPHHE RELFNGMGEQ GPIGQMYDGY DRKRCRTSSE RNLDRPSYSE 360 RRSRQRDTGP VEIDGSDLRH RLRRRKINGS PGISPERSGE SRRRDDRYRE RAYDGHRTHR 420 DRHQGPRGST LSSRLQGRIK LPGRSPDRVD ARSERERDRR QLRDRLSPVM PMDIQGGRHR 480 EAGHYQERIR QRSSERASSA RIADGKHSRR NVTDSLNFAS RKDFGPESRK ANGSVQSEAS 540 LDFEGPTPLS VILQRKRQAA SGNGNGSSAH NVKEDKSAVV SHRQAQSPAE AEEEGYDNTI 600 SSEEYKSRSG DEEYKEEGQV PASSSHGDKA EAEDMIEVEN QEADNYEQRQ GESEYEATEG 660 YEYKSEDENA YQDDEEEFED DDDFARKVGV VFS

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

AEAKPLTPEE EALRRNTDCV YFLASPLTCK KGNQCDFRHS EGARMNPRDC YYWLNGNCLN  60
PKCSFRHPPI DGMFGAPTPG IPAVSSHYAA YNSGKQMVPC YYFQKGNCIK GDKCPFSHGP  120
QPAGNNPPEQ VAKVSSFPLE QPQTQKNEFL GVKEFAQTNH LIQQGGPIIG DRSKSVNRVA  180
ANFARTAAAA IPADLASSAV KSLPKSGRVK NSMPAANKSV GTSSGEDHPE CYQNNLPVET  240
DPMQDWSQPY QTPPQDDMPE DSRDADDLLG ESSPGFDVLV ANDADAGAYM HDPDDFGRDI  300
YPVEDYEYAP ADFEIQPHHE RELFNGMGEQ GPIGQMYDGY DRKRCRTSSE RNLDRPSYSE  360
RRSRQRDTGP VEIDGSDLRH RLRRRKINGS PGISPERSGE SRRRDDRYRE RAYDGHRTHR  420
DRHQGPRGST LSSRLQGRIK LPGRSPDRVD ARSERERDRR QLRDRLSPVM PMDIQGGRHR  480
EAGHYQERIR QRSSERASSA RIADGKHSRR NVTDSLNFAS RKDFGPESRK ANGSVQSEAS  540
LDFEGPTPLS VILQRKRQAA SGNGNGSSAH NVKEDKSAVV SHRQAQSPAE AEEEGYDNTI  600
SSEEYKSRSG DEEYKEEGQV PASSSHGDKA EAEDMIEVEN QEADNYEQRQ GESEYEATEG  660
YEYKSEDENA YQDDEEEFED DDDFARKVGV VFS

Link Out ? help Back to Top
Ensembl	TRIDC2BG083690.1