PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC2BG083680.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 793aa MW: 88697.2 Da PI: 6.3948 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 4e-23 | 96 | 197 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + TRIDC2BG083680.8 96 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 184 99***********************9*****86555544..8************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ TRIDC2BG083680.8 185 NEKNQLWLGIRRA 197 999999*****97 PP | |||||||
2 | Auxin_resp | 110.5 | 1.7e-36 | 222 | 305 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPra++seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW S Wrs+k TRIDC2BG083680.8 222 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 305 79*******************************986599******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence |
LVCLPTLGTR VVYFPQGHSE QVAASTNKEV EGHIPNYPNL PPQLICQLHD VTMHADVETD 60 EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER 120 VFPPLDFTQQ PPAQELIARD IHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV 180 LFIWNEKNQL WLGIRRANRT QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA 240 CPSEFVIPLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY 300 WRSVKVGWDE STAGERPPRV SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL 360 MWLRGVAGDG GYQSMNFQSP GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK 420 QQFLNLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQTVSAD SQNIQTMLNS SAIQHQLQQL 480 QQLQQVHQVQ QAQQAHIDQK QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS 540 SSFTTSSSSD NMLESNFLQG NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL 600 SFGGSGLLNS PTSKDGSLES KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST 660 IPSGSTYLQS PMYGCLDDSS GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL 720 REELGQMYGI RGQLDDPDRS GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH 780 KLGKQGNDPR YLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC2BG083680.8 |