PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG083680.16

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 645aa MW: 71961.3 Da PI: 6.9317

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG083680.16	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.2e-11	5	49	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ TRIDC2BG083680.16 5 RGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLWLGIRRA 49 578899***********************..8999999***97 PP
2	Auxin_resp	110.9	1.3e-36	74	157	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPra++seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW S Wrs+k TRIDC2BG083680.16 74 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 157 79*****************************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
AHLPRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLWLGIRRAN RTQTVMPSSV 60 LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RACPSEFVIP LSKYIKAVFH TRISVGMRFR 120 MLFETEESSV RRYMGTITEV SDADPVRWAS SYWRSVKVGW DESTAGERPP RVSLWEIEPL 180 TTFPMYPSLF PLRVKHPWYS GVAGLQDDSN ALMWLRGVAG DGGYQSMNFQ SPGIGSWGQQ 240 RLHPSLMSTE HDQYQAVVAA AAAASQSGGY MKQQFLNLQQ PMQSPQEHCN LNPLLQQQIL 300 QQASQQQTVS ADSQNIQTML NSSAIQHQLQ QLQQLQQVHQ VQQAQQAHID QKQKIQSDQT 360 YHVPTSASLP SPTSLPSHLR EKFGFSDPNA NSSSFTTSSS SDNMLESNFL QGNSKAVDLS 420 RFNQPVASDQ QQQQQQQQQQ AWKQKFMGSQ SLSFGGSGLL NSPTSKDGSL ESKIGSDVQN 480 QSLFSPQVDS SSLLYNMVPN MTSNVADNNM STIPSGSTYL QSPMYGCLDD SSGIFQNTGE 540 NDPTSRTFVK VYKSGSVGRS LDITRFSNYA ELREELGQMY GIRGQLDDPD RSGWQLVFVD 600 RENDVLLLGD DPWESFVNSV WYIKILSPED VHKLGKQGND PRYLS

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

AHLPRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLWLGIRRAN RTQTVMPSSV  60
LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RACPSEFVIP LSKYIKAVFH TRISVGMRFR  120
MLFETEESSV RRYMGTITEV SDADPVRWAS SYWRSVKVGW DESTAGERPP RVSLWEIEPL  180
TTFPMYPSLF PLRVKHPWYS GVAGLQDDSN ALMWLRGVAG DGGYQSMNFQ SPGIGSWGQQ  240
RLHPSLMSTE HDQYQAVVAA AAAASQSGGY MKQQFLNLQQ PMQSPQEHCN LNPLLQQQIL  300
QQASQQQTVS ADSQNIQTML NSSAIQHQLQ QLQQLQQVHQ VQQAQQAHID QKQKIQSDQT  360
YHVPTSASLP SPTSLPSHLR EKFGFSDPNA NSSSFTTSSS SDNMLESNFL QGNSKAVDLS  420
RFNQPVASDQ QQQQQQQQQQ AWKQKFMGSQ SLSFGGSGLL NSPTSKDGSL ESKIGSDVQN  480
QSLFSPQVDS SSLLYNMVPN MTSNVADNNM STIPSGSTYL QSPMYGCLDD SSGIFQNTGE  540
NDPTSRTFVK VYKSGSVGRS LDITRFSNYA ELREELGQMY GIRGQLDDPD RSGWQLVFVD  600
RENDVLLLGD DPWESFVNSV WYIKILSPED VHKLGKQGND PRYLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	1e-122	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG083680.16