PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG083680.15

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 653aa MW: 72602.8 Da PI: 6.6338

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG083680.15	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.6	7.1e-11	13	57	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ TRIDC2BG083680.15 13 EGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLWLGIRRA 57 567899***********************..8999999***97 PP
2	Auxin_resp	110.8	1.3e-36	82	165	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPra++seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW S Wrs+k TRIDC2BG083680.15 82 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 165 79*****************************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
FTTSSGSSGT SSEGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT 60 QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR 120 ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV 180 SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL MWLRGVAGDG GYQSMNFQSP 240 GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN 300 PLLQQQILQQ ASQQQTVSAD SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK 360 QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG 420 NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES 480 KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST IPSGSTYLQS PMYGCLDDSS 540 GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS 600 GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

FTTSSGSSGT SSEGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT  60
QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR  120
ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV  180
SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL MWLRGVAGDG GYQSMNFQSP  240
GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN  300
PLLQQQILQQ ASQQQTVSAD SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK  360
QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG  420
NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES  480
KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST IPSGSTYLQS PMYGCLDDSS  540
GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS  600
GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	1e-121	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG083680.15