PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG083680.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 833aa MW: 92333.1 Da PI: 9.0168

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG083680.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54	3.1e-17	171	237	29	99
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ ++l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ TRIDC2BG083680.1 171 PPA--QELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLWLGIRRA 237 333..48999*******************************************..8999999***97 PP
2	Auxin_resp	110.4	1.9e-36	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPra++seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW S Wrs+k TRIDC2BG083680.1 262 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 345 79*****************************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence
ELLVRGQPRR PAAAAAARRA AGGREEEPQL GAVARLRRPA RLPPHPRHAR RLLPAGPQRA 60 GGGVDEQGGG GAHPQLPQPA AAAHLPAARR HNACRCGDRR SVRADDAAAA EPARAERRLP 120 AGGDGDHEQA ADQLLLQDAD GQRHQHARRL LRAAPCRRAR LPPSGDFTQQ PPAQELIARD 180 IHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT 240 QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR 300 ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV 360 SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL MWLRGVAGDG GYQSMNFQSP 420 GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN 480 PLLQQQILQQ ASQQQTVSAD SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK 540 QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG 600 NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES 660 KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST IPSGSTYLQS PMYGCLDDSS 720 GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS 780 GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence

ELLVRGQPRR PAAAAAARRA AGGREEEPQL GAVARLRRPA RLPPHPRHAR RLLPAGPQRA  60
GGGVDEQGGG GAHPQLPQPA AAAHLPAARR HNACRCGDRR SVRADDAAAA EPARAERRLP  120
AGGDGDHEQA ADQLLLQDAD GQRHQHARRL LRAAPCRRAR LPPSGDFTQQ PPAQELIARD  180
IHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT  240
QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR  300
ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV  360
SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL MWLRGVAGDG GYQSMNFQSP  420
GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN  480
PLLQQQILQQ ASQQQTVSAD SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK  540
QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG  600
NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES  660
KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST IPSGSTYLQS PMYGCLDDSS  720
GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS  780
GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	1e-139	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG083680.1