PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG078260.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 481aa MW: 50876 Da PI: 7.1141

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG078260.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	115	164	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g TRIDC2BG078260.3 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164 78*****************......55**********************998 PP
2	AP2	43.1	1.1e-13	206	256	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+ +++a+ k +g TRIDC2BG078260.3 206 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 256 89******.7**5553..2.26********************99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MWDLNDSPAA EAAHAPLSPS VDDSGASSSS AAAVVEIPDD GEDDSAEAVV TRQFFPPAAP 60 GEGAAGNGRA AWLRLAGAPA PAVAAAAGGG GGGGGGPAAS AAAKKSRRGP RSRSSQYRGV 120 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGMEADIN FSLEDYDDIK 180 QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE 240 EEAARSYDRA AIKCNGKDAV TNFDPSTYAE EFEPTASAGD AEQNLDLSLG SSAGSNKRGS 300 LDGGDDDGAA GPDQRVPMAF ELDWQTAAAR STKAKFDQSL THHQMPPPLL QASHMPFSPR 360 HHQFMGNGDP GTAGGPSLTV GAGGGGGHWP LPPHHQYQPP PPPQQQQQQQ QQQRLHGWGN 420 VVPGTSWQPP QPPPHQAGPP PNNAAAAAAA AAASSRFPPY IATQAQSWLQ KNGFHSLARP 480 T

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MWDLNDSPAA EAAHAPLSPS VDDSGASSSS AAAVVEIPDD GEDDSAEAVV TRQFFPPAAP  60
GEGAAGNGRA AWLRLAGAPA PAVAAAAGGG GGGGGGPAAS AAAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGMEADIN FSLEDYDDIK  180
QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE  240
EEAARSYDRA AIKCNGKDAV TNFDPSTYAE EFEPTASAGD AEQNLDLSLG SSAGSNKRGS  300
LDGGDDDGAA GPDQRVPMAF ELDWQTAAAR STKAKFDQSL THHQMPPPLL QASHMPFSPR  360
HHQFMGNGDP GTAGGPSLTV GAGGGGGHWP LPPHHQYQPP PPPQQQQQQQ QQQRLHGWGN  420
VVPGTSWQPP QPPPHQAGPP PNNAAAAAAA AAASSRFPPY IATQAQSWLQ KNGFHSLARP  480
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-97	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG078260.3