PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG078260.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 390aa    MW: 41370.5 Da    PI: 6.0117
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG078260.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-17115164155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  TRIDC2BG078260.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                       78*******************......55************************998 PP
2AP243.58e-14206256155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+ +++a+ k +g
  TRIDC2BG078260.1 206 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 256
                       89********.7******5553..2.26**********************99776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MWDLNDSPAA EAAHAPLSPS VDDSGASSSS AAAVVEIPDD GEDDSAEAVV TRQFFPPAAP  60
GEGAAGNGRA AWLRLAGAPA PAVAAAAGGG GGGGGGPAAS AAAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGMEADIN FSLEDYDDIK  180
QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE  240
EEAARSYDRA AIKCNGKDAV TNFDPSTYAE EFEPTGAQCS TASAGDAEQN LDLSLGSSAG  300
SNKRGSLDGG DDDGAAGPDQ RVPMAFELDW QTAAARSTKA KFDQSLTHHQ MPPPLLQASH  360
MPFSPRHHQA RTDSDCLVQT VQFMGNGDPG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.13e-99AP2 family protein