PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG076330.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 378aa MW: 40958 Da PI: 7.8394

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG076330.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	149	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ TRIDC2BG076330.5 149 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 227 6****************************98725689***********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
IMDHQEGGGG IHREHDHHHH HHLGGYSLEP SSLALLPPSS HATIAAHSPH DILQFYHHPT 60 SHHYLAAAAA GGNGSPYGQF GGGGSAGGFQ SYYHQQVGTG APEYYFPTLV SSAEENMASF 120 AATQLGLNLG YRTYFPPRGG YTYGHHPPRC QAEGCKADLS GAKRYHRRHK VCEHHSKAPV 180 VVTAGGLHQR FCQQCSRFHL LDEFDDAKKS CRKRLADHNR RRRKSKPSEA DAADKRRTQA 240 SKAASTKEAA GSSSKSTGTG DGMDIQVQLG SGDLSKNQDE TMGLGEVVKE MQVDPKGKAS 300 MQQQQGHHGH GLHLQSQHGF PFPSSSAGSC FPQSQAVSST DNTSNIGQVQ QEQPGLGFHQ 360 HSNILQLGQA MFDLDFDH

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

IMDHQEGGGG IHREHDHHHH HHLGGYSLEP SSLALLPPSS HATIAAHSPH DILQFYHHPT  60
SHHYLAAAAA GGNGSPYGQF GGGGSAGGFQ SYYHQQVGTG APEYYFPTLV SSAEENMASF  120
AATQLGLNLG YRTYFPPRGG YTYGHHPPRC QAEGCKADLS GAKRYHRRHK VCEHHSKAPV  180
VVTAGGLHQR FCQQCSRFHL LDEFDDAKKS CRKRLADHNR RRRKSKPSEA DAADKRRTQA  240
SKAASTKEAA GSSSKSTGTG DGMDIQVQLG SGDLSKNQDE TMGLGEVVKE MQVDPKGKAS  300
MQQQQGHHGH GLHLQSQHGF PFPSSSAGSC FPQSQAVSST DNTSNIGQVQ QEQPGLGFHQ  360
HSNILQLGQA MFDLDFDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	237	RRRRKSKPSEADAADKRR
2	221	226	RRRKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG076330.5