PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC2BG074390.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 308aa MW: 32132 Da PI: 10.1378 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.8e-08 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.4 99 KTRMCTKYNTAEGCKFGDKCHFAHGE 124 89**********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.2e-12 | 274 | 299 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.4 274 YKTKICENFLK-GTCTFGERCHFAHGE 299 9**********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
SAAPHSASAK PQARVSASTR RARHGCRRPQ EIPAGVRQRR LRRREALEST VGCPFGEGCH 60 FAHFVPGGYQ AVSKSHSLGH AAVSAASRAP ADHAASGVKT RMCTKYNTAE GCKFGDKCHF 120 AHGERELGRP PSSYMSQESS YAPPMGGRYG GRHEPPPPAS MGPPAGNFGA SSTCKVSVDA 180 ALAGGIIGKG GVNTKQICRI TGVKLSIRDH ESNPDLKNIE LEGSFDQIKQ ANDMVRDLIA 240 SISASTPSKN PAGTAAPAGR GGGGGGGPGG RSNYKTKICE NFLKGTCTFG ERCHFAHGET 300 EQRKGAAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-50 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC2BG074390.4 |