PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC2BG074390.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 30377.8 Da PI: 9.1819 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 86 | 111 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.2 86 KTRMCTKYNTAEGCKFGDKCHFAHGE 111 89**********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2e-12 | 261 | 286 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.2 261 YKTKICENFLK-GTCTFGERCHFAHGE 286 9**********.*************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence |
PESANGGSAG GKRSRESESQ QTGLSSKSKP CTKFFSTVGC PFGEGCHFAH FVPGGYQAVS 60 KSHSLGHAAV SAASRAPADH AASGVKTRMC TKYNTAEGCK FGDKCHFAHG ERELGRPPSS 120 YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA GGIIGKGGVN 180 TKQICRITGV KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS ASTPSKNPAG 240 TAAPAGRGGG GGGGPGGRSN YKTKICENFL KGTCTFGERC HFAHGETEQR KGAAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-58 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC2BG074390.2 |