PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG054480.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 323aa MW: 34458.4 Da PI: 6.3705

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG054480.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.6	1.1e-07	22	58	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ + + ++lfC+ + +lC+ C H g H TRIDC2BG054480.3 22 RACDSCATEAARLFCRADAAFLCAGCDARAH-GagsrH 58 67*************************9999.435667 PP
2	zf-B_box	25.2	3.4e-08	61	106	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC++C +H H++vp+ TRIDC2BG054480.3 61 VWLCEVCEHAPAAVTCKADAAVLCASCDADIHAAnplarrHERVPV 106 679*****************************66888889999986 PP
3	CCT	70.1	5.7e-24	246	288	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+ TRIDC2BG054480.3 246 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 288 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
ARAMEGEEKP VVGGAYWGVG ARACDSCATE AARLFCRADA AFLCAGCDAR AHGAGSRHAR 60 VWLCEVCEHA PAAVTCKADA AVLCASCDAD IHAANPLARR HERVPVAPFF GAAADAHKPF 120 VSSGAQAAAE DDGSNDAEAA SWLLPEPDHK DGANGATADV FFADSDHYLD LDFARSMDDI 180 KAISVQLNGQ PEIDLNGGNK GFYSDHSMNH SVRIISSLCT SKVSSSEAAV VPDAAAAPVV 240 SRGREREARL MRYREKRKSR RFEKTIRYAS RKAYAETRPR VKGRFAKRTG TADADALEEH 300 EEMYSSAAAA VAALMAPGPD HDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	7e-64	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG054480.3