PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC2BG054480.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CO-like | ||||||||
Protein Properties | Length: 323aa MW: 34458.4 Da PI: 6.3705 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1.1e-07 | 22 | 58 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ + + ++lfC+ + +lC+ C H g H TRIDC2BG054480.3 22 RACDSCATEAARLFCRADAAFLCAGCDARAH-GagsrH 58 67*************************9999.435667 PP | |||||||
2 | zf-B_box | 25.2 | 3.4e-08 | 61 | 106 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC++C +H H++vp+ TRIDC2BG054480.3 61 VWLCEVCEHAPAAVTCKADAAVLCASCDADIHAAnplarrHERVPV 106 679*****************************66888889999986 PP | |||||||
3 | CCT | 70.1 | 5.7e-24 | 246 | 288 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+ TRIDC2BG054480.3 246 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 288 9****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence |
ARAMEGEEKP VVGGAYWGVG ARACDSCATE AARLFCRADA AFLCAGCDAR AHGAGSRHAR 60 VWLCEVCEHA PAAVTCKADA AVLCASCDAD IHAANPLARR HERVPVAPFF GAAADAHKPF 120 VSSGAQAAAE DDGSNDAEAA SWLLPEPDHK DGANGATADV FFADSDHYLD LDFARSMDDI 180 KAISVQLNGQ PEIDLNGGNK GFYSDHSMNH SVRIISSLCT SKVSSSEAAV VPDAAAAPVV 240 SRGREREARL MRYREKRKSR RFEKTIRYAS RKAYAETRPR VKGRFAKRTG TADADALEEH 300 EEMYSSAAAA VAALMAPGPD HDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 7e-64 | CO-like family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC2BG054480.3 |