PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG047940.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23541.2 Da    PI: 7.0599
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG047940.13genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.59.9e-251058250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       rien   rqvtf+kRr g+lKKA+ELSvLCda++ v++fs++gk+ye +
  TRIDC2BG047940.13 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVMVFSPHGKVYELA 58
                       8*********************************************965 PP

2K-box59.41.5e-2077173499
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                        ++g+s e++k e  qqe+  L++ei+ Lq+ +R + Ge d++ ++l+eLq Le++Le  + +iR +K++++ ++ie l+ ke  l+ +n  L
  TRIDC2BG047940.13  77 AHGESSEQNKPEVIQQEVLLLRQEIDLLQKGLRYMYGEnDINHMNLNELQTLESNLEIWVHNIRYTKMQIISREIEMLKTKEGILKAANDIL 168
                        45667899999**************************978**************************************************** PP

              K-box  95 rkkle 99 
                        ++++ 
  TRIDC2BG047940.13 169 QERII 173
                        99875 PP

Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVMVFSP HGKVYELATN  60
GNMQGLIERY KGSNTEAHGE SSEQNKPEVI QQEVLLLRQE IDLLQKGLRY MYGENDINHM  120
NLNELQTLES NLEIWVHNIR YTKMQIISRE IEMLKTKEGI LKAANDILQE RIIEQSGILD  180
TSSNMMMPQF PFQRTMESDY YF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-62MIKC_MADS family protein